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Sequence-level evals
Sequence-level evals · eval bucket
Regulatory readouts, variant effects.
Regulatory readouts and variant effects — grading a model over raw genomic sequence.
102
evals implemented · 3 families
01
Overview
The sequence bucket grades regulatory readouts and variant effects predicted directly from
genomic sequence. 102 evals span 3 task
families, each a (task × dataset-arm) pair drawn
straight from the runtime registry.
02
Families
Task families present in this bucket, by eval count.
03
Catalog
Filter and sort every sequence eval; expand any card for its IO contract.
Task all sequence_classification variant_effect_classification variant_effect_regression zeroshoot_clustering
Publication all avsec_2026_nature baydar_2026_nucleic_acids_research dalla-torre_2023_nature_methods jurka_2005_cytogenet_genome_res linder_2025_nature_genetics niki_2025_biorxiv pampari_2025_biorxiv
sort Task Dataset Family Publication # metrics ↑
102 of 102 evals · 3 families
sequence_classification 68 sequence_classification avsec_2026_nature / peak_atac_cell_line@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_atac_donor_derived@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_cage_cell_line@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_cage_donor_derived@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_chip_histone_cell_line@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_chip_histone_donor_derived@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_chip_tf_cell_line@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_chip_tf_donor_derived@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_dnase_cell_line@0.0.1 3m # ▸
sequence_classification avsec_2026_nature / peak_dnase_donor_derived@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/ascl1@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/creb1@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/ctcf@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/dlx5@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/fos@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/foxp2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/lhx2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/mef2c@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/neurod1@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/neurog2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/nfe2l2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/olig2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/pax6@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/rest@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/sox2@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/spi1@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/stat3@0.0.1 3m # ▸
sequence_classification baydar_2026_nucleic_acids_research / genomic_region_classification/tbr1@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/3utr@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/5utr@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/cds@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/exons@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/intergenic@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/introns@0.0.1 3m # ▸
sequence_classification dalla-torre_2023_nature_methods / genomic_region_classification/promoter@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/dna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/line@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/low_complexity@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/ltr@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/rc@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/retroposon@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/rna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/rrna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/satellite@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/scrna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/simple_repeat@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/sine@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/snrna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/srprna@0.0.1 3m # ▸
sequence_classification jurka_2005_cytogenet_genome_res / genomic_region_classification/trna@0.0.1 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H2AFZ@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K27ac@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K27me3@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K36me3@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K4me1@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K4me2@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K4me3@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K9ac@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H3K9me3@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_H4K20me1@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_enhancers@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_enhancers_types@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_promoter_all@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_promoter_no_tata@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_promoter_tata@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_splice_sites_acceptors@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_splice_sites_all@0.0.2 3m # ▸
sequence_classification niki_2025_biorxiv / NT_splice_sites_donors@0.0.2 3m # ▸
variant_effect 31 variant_effect_classification avsec_2026_nature / caqtl_african_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / caqtl_european_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / clinvar_missense@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / clinvar_noncoding@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / clinvar_splice_site_region@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / dsqtl_yoruba_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / eqtl_variant_borzoi_sign_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / eqtl_variant_catalogue_causality_gene_balanced_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / mfass_splicing@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / paqtl_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification avsec_2026_nature / sqtl_variant_causality_gene_human@0.0.1 2m # ▸
variant_effect_classification linder_2025_nature_genetics / eqtl_variant_borzoi_sign_human@0.0.1 2m # ▸
variant_effect_classification linder_2025_nature_genetics / paqtl_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification linder_2025_nature_genetics / sqtl_variant_causality_gene_human@0.0.1 2m # ▸
variant_effect_classification pampari_2025_biorxiv / bqtl_spi1_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification pampari_2025_biorxiv / caqtl_african_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification pampari_2025_biorxiv / caqtl_european_variant_causality_human@0.0.1 2m # ▸
variant_effect_classification pampari_2025_biorxiv / dsqtl_yoruba_variant_causality_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / caqtl_african_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / caqtl_european_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / caqtl_microglia_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / caqtl_smc_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / dsqtl_yoruba_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression avsec_2026_nature / eqtl_variant_borzoi_coefficient_human@0.0.1 2m # ▸
variant_effect_regression linder_2025_nature_genetics / eqtl_variant_borzoi_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / bqtl_spi1_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / caqtl_african_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / caqtl_european_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / caqtl_microglia_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / caqtl_smc_variant_coefficient_human@0.0.1 2m # ▸
variant_effect_regression pampari_2025_biorxiv / dsqtl_yoruba_variant_coefficient_human@0.0.1 2m # ▸
sequence_clustering 3 zeroshoot_clustering baydar_2026_nucleic_acids_research / zeroshoot_clustering@0.0.1 3m # ▸
zeroshoot_clustering dalla-torre_2023_nature_methods / zeroshoot_clustering@0.0.1 3m # ▸
zeroshoot_clustering jurka_2005_cytogenet_genome_res / zeroshoot_clustering@0.0.1 3m # ▸